species:   Drmel
pid:       MI0011578
parent:    dme-mir-2489
paralog:   
locus:     NT_033779.5:13609974-13610068
matures:   ['UAUUGUAUGUUGUAUUUGCAGU', 'GUGAGUAUGGCUAUACAAAUCA']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033779.5:13609974-13610068

0 out of bounds
2 alignments
2 proper strand
1 stranded perfect matches

             ***********************                       ***********************             
GCAAUAAGUUAGACGUGAGUAUGGCUAUACAAAUCAUCUGGAACGUAAGUUCUAAUGUAUGUAUUGUAUGUUGUAUUUGCAGUUUUAUGAUAGCA
((.((..((.(((((((((((((((.((((((..((((((((((....))))))..).)))..))))))))))))))))).)))).)).)).)).
-------------------------------------------------------------UAUUGUAUGUUGUAUUUGCAGU------------ l=22 a=0 c
--------------GUGAGUAUGGCUAUACAAAUCA----------------------------------------------------------- l=22 a=0 c*
-------------------------------------------------------------UAUUGUAUGUUGUAUUUGCAG------------- l=21 a=1 ma
---------------UGAGUAUGGCUAUACAAAUCA----------------------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------UAUUGUAUGUUGUAUUUGCAG------------- l=21 a=1 (ma)
-------------------------------------------------------------UAUUGUAUGUUGUAUUUGCAGa------------ l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
